STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RBR_18810ABC-type polysaccharide/polyol phosphate transport system, ATPase component. (424 aa)    
Predicted Functional Partners:
RBR_11920
Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC.
 
 
 0.827
RBR_20460
Predicted amidophosphoribosyltransferases.
   
    0.694
RBR_14840
O-Antigen ligase.
  
  
 0.567
RBR_07400
Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.471
RBR_07460
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
   
 0.451
RBR_18590
Capsular exopolysaccharide family.
     
 0.448
RBR_10570
Xanthine phosphoribosyltransferase.
  
    0.426
RBR_19670
Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins.
  
    0.426
RBR_06280
Iron-only hydrogenase maturation protein HydG.
   
    0.410
RBR_00840
Hypothetical protein.
    
  0.404
Your Current Organism:
Ruminococcus bromii
NCBI taxonomy Id: 657321
Other names: R. bromii L2-63, Ruminococcus bromii L2-63, Ruminococcus bromii str. L2-63, Ruminococcus bromii strain L2-63
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