Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CK1_16640Bacterial type II secretion system protein F domain. (151 aa)    
Predicted Functional Partners:
CK1_16620
Flp pilus assembly protein TadB.
 
  
 0.995
CK1_16610
Hypothetical protein.
 
  
 0.957
CK1_16690
Hypothetical protein.
 
  
 0.852
CK1_16290
Flp pilus assembly protein, ATPase CpaF.
 
  
 0.840
CK1_16730
Hypothetical protein.
 
     0.794
CK1_16670
Hypothetical protein.
 
     0.788
CK1_16300
Flp pilus assembly protein, ATPase CpaF.
 
  
 0.774
CK1_16270
Type IV leader peptidase family.
 
  
 0.751
CK1_16630
Hypothetical protein.
       0.737
CK1_35140
Protein of unknown function (DUF1292).
  
     0.691
Your Current Organism:
Ruminococcus sp. SR15
NCBI taxonomy Id: 657323
Other names: R. sp. SR1/5, Ruminococcus sp. SR1/5
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