STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CK1_21120Nitrogenase molybdenum-iron protein, alpha and beta chains. (230 aa)    
Predicted Functional Partners:
CK1_21140
Nitrogenase component 1 type Oxidoreductase.
     0.966
CK1_21150
Nitrogenase molybdenum-iron protein, alpha and beta chains.
     0.940
CK1_21170
Mo-nitrogenase iron protein subunit NifH; Belongs to the NifH/BchL/ChlL family.
 
 
 0.832
CK1_21030
Nitrogenase component 1 type Oxidoreductase.
     0.787
CK1_21050
Nitrogenase subunit NifH (ATPase).
 
 
 0.733
CK1_21090
Hydrogenase assembly chaperone HypC/HupF.
 
     0.701
CK1_05800
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
   
  
 0.524
CK1_21100
[NiFe] hydrogenase maturation protein HypF; Belongs to the carbamoyltransferase HypF family.
 
   
 0.508
CK1_21060
Hypothetical protein.
 
     0.486
CK1_18110
Ammonium transporter; Belongs to the P(II) protein family.
  
 
 0.426
Your Current Organism:
Ruminococcus sp. SR15
NCBI taxonomy Id: 657323
Other names: R. sp. SR1/5, Ruminococcus sp. SR1/5
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