Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CK1_32020Protein of unknown function (DUF3268). (136 aa)    
Predicted Functional Partners:
CK1_32420
Hypothetical protein.
  
     0.768
CK1_32220
Hypothetical protein.
  
     0.767
CK1_09300
Hypothetical protein.
  
     0.766
CK1_31820
MoxR-like ATPases.
  
     0.763
CK1_32010
Hypothetical protein.
       0.746
CK1_32230
Type IV secretory pathway, VirD4 components.
  
     0.745
CK1_10230
Nitric oxide reductase activation protein.
  
     0.725
CK1_32090
Hypothetical protein.
  
     0.680
CK1_31630
Uncharacterised protein family (UPF0153).
  
     0.642
CK1_10420
Hypothetical protein.
  
     0.626
Your Current Organism:
Ruminococcus sp. SR15
NCBI taxonomy Id: 657323
Other names: R. sp. SR1/5, Ruminococcus sp. SR1/5
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