Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CK1_36620Protein of unknown function (DUF2807). (305 aa)    
Predicted Functional Partners:
CK1_36630
Protein of unknown function (DUF1700).
 
     0.943
CK1_36610
Putative stress-responsive transcriptional regulator.
  
  
 0.862
CK1_36640
Transcriptional regulator, PadR family.
 
     0.850
CK1_16860
Hypothetical protein.
  
     0.595
CK1_01200
Guanosine polyphosphate pyrophosphohydrolases/synthetases.
  
     0.518
CK1_36600
Small, acid-soluble spore proteins, alpha/beta type.
       0.517
CK1_04380
Hypothetical protein.
  
     0.509
CK1_13550
Hypothetical protein.
  
     0.501
CK1_00510
Hypothetical protein.
  
     0.479
hisI
phosphoribosyl-ATP pyrophosphohydrolase; In the C-terminal section; belongs to the PRA-PH family.
 
     0.475
Your Current Organism:
Ruminococcus sp. SR15
NCBI taxonomy Id: 657323
Other names: R. sp. SR1/5, Ruminococcus sp. SR1/5
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