STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CK1_36910Selenocysteine lyase. (383 aa)    
Predicted Functional Partners:
CK1_33860
FeS cluster assembly scaffold protein NifU, Clostridium type.
  
 0.882
CK1_17940
Hypothetical protein.
  
 0.829
CK1_27990
Hypothetical protein.
    
   0.818
CK1_06070
Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
 
 
 0.728
CK1_05800
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
  
  
 0.573
CK1_36900
Hypothetical protein.
       0.499
selD
Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
   
 0.423
Your Current Organism:
Ruminococcus sp. SR15
NCBI taxonomy Id: 657323
Other names: R. sp. SR1/5, Ruminococcus sp. SR1/5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.