STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CK1_38600DJ-1 family protein. (233 aa)    
Predicted Functional Partners:
rpsJ
SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
   0.791
CK1_38590
Hypothetical protein.
       0.773
CK1_38610
Uncharacterized protein conserved in bacteria.
       0.677
CK1_05800
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
  
 
 0.639
CK1_32990
Ribosomal protein L14; Belongs to the universal ribosomal protein uL14 family.
    
   0.639
CK1_38580
GDSL-like Lipase/Acylhydrolase.
  
 
  0.601
CK1_34240
NADH:flavin oxidoreductases, Old Yellow Enzyme family.
  
 
 0.547
CK1_34310
NADH:flavin oxidoreductases, Old Yellow Enzyme family.
  
 
 0.547
rplM
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
   0.544
rpsS
SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
   0.537
Your Current Organism:
Ruminococcus sp. SR15
NCBI taxonomy Id: 657323
Other names: R. sp. SR1/5, Ruminococcus sp. SR1/5
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