STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CK1_39590Thioredoxin reductase. (433 aa)    
Predicted Functional Partners:
CK1_39580
Uncharacterized protein with conserved CXXC pairs.
    0.996
CK1_39600
Predicted dehydrogenase.
  
 0.995
CK1_39550
Glycerol-3-phosphate responsive antiterminator (mRNA-binding).
 
    0.815
CK1_05800
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
  
 
 0.680
CK1_00750
Thioredoxin.
  
 
 0.586
CK1_08640
Thioredoxin; Belongs to the thioredoxin family.
  
 
 0.586
CK1_08740
Thioredoxin domain-containing protein; Belongs to the thioredoxin family.
  
 
 0.586
CK1_37370
AhpC/TSA family.
  
 
 0.544
CK1_28990
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
  
  
 0.465
CK1_15520
Uncharacterized flavoproteins.
     
 0.462
Your Current Organism:
Ruminococcus sp. SR15
NCBI taxonomy Id: 657323
Other names: R. sp. SR1/5, Ruminococcus sp. SR1/5
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