Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CIY_01760 | CIY_07840 | Predicted transcription factor, homolog of eukaryotic MBF1. | Predicted transcriptional regulators. | 0.707 |
CIY_01760 | CIY_24270 | Predicted transcription factor, homolog of eukaryotic MBF1. | Predicted permease. | 0.410 |
CIY_07830 | CIY_07840 | Predicted membrane protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family. | Predicted transcriptional regulators. | 0.430 |
CIY_07840 | CIY_01760 | Predicted transcriptional regulators. | Predicted transcription factor, homolog of eukaryotic MBF1. | 0.707 |
CIY_07840 | CIY_07830 | Predicted transcriptional regulators. | Predicted membrane protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family. | 0.430 |
CIY_07840 | CIY_07850 | Predicted transcriptional regulators. | Hypothetical protein. | 0.671 |
CIY_07840 | CIY_07860 | Predicted transcriptional regulators. | Membrane protease subunits, stomatin/prohibitin homologs. | 0.431 |
CIY_07840 | CIY_09480 | Predicted transcriptional regulators. | Predicted transcription factor, homolog of eukaryotic MBF1. | 0.669 |
CIY_07840 | CIY_24270 | Predicted transcriptional regulators. | Predicted permease. | 0.458 |
CIY_07850 | CIY_07840 | Hypothetical protein. | Predicted transcriptional regulators. | 0.671 |
CIY_07850 | CIY_07860 | Hypothetical protein. | Membrane protease subunits, stomatin/prohibitin homologs. | 0.482 |
CIY_07860 | CIY_07840 | Membrane protease subunits, stomatin/prohibitin homologs. | Predicted transcriptional regulators. | 0.431 |
CIY_07860 | CIY_07850 | Membrane protease subunits, stomatin/prohibitin homologs. | Hypothetical protein. | 0.482 |
CIY_09480 | CIY_07840 | Predicted transcription factor, homolog of eukaryotic MBF1. | Predicted transcriptional regulators. | 0.669 |
CIY_24270 | CIY_01760 | Predicted permease. | Predicted transcription factor, homolog of eukaryotic MBF1. | 0.410 |
CIY_24270 | CIY_07840 | Predicted permease. | Predicted transcriptional regulators. | 0.458 |