Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CIY_06730 | CIY_13470 | Hypothetical protein. | Hypothetical protein. | 0.502 |
CIY_11260 | CIY_13470 | Alcohol dehydrogenase, class IV. | Hypothetical protein. | 0.491 |
CIY_13450 | CIY_13460 | Predicted nucleotidyltransferases. | Uncharacterized conserved protein. | 0.973 |
CIY_13450 | CIY_13470 | Predicted nucleotidyltransferases. | Hypothetical protein. | 0.507 |
CIY_13450 | CIY_13480 | Predicted nucleotidyltransferases. | Isopentenyldiphosphate isomerase. | 0.584 |
CIY_13460 | CIY_13450 | Uncharacterized conserved protein. | Predicted nucleotidyltransferases. | 0.973 |
CIY_13460 | CIY_13470 | Uncharacterized conserved protein. | Hypothetical protein. | 0.507 |
CIY_13460 | CIY_13480 | Uncharacterized conserved protein. | Isopentenyldiphosphate isomerase. | 0.507 |
CIY_13470 | CIY_06730 | Hypothetical protein. | Hypothetical protein. | 0.502 |
CIY_13470 | CIY_11260 | Hypothetical protein. | Alcohol dehydrogenase, class IV. | 0.491 |
CIY_13470 | CIY_13450 | Hypothetical protein. | Predicted nucleotidyltransferases. | 0.507 |
CIY_13470 | CIY_13460 | Hypothetical protein. | Uncharacterized conserved protein. | 0.507 |
CIY_13470 | CIY_13480 | Hypothetical protein. | Isopentenyldiphosphate isomerase. | 0.773 |
CIY_13470 | CIY_13490 | Hypothetical protein. | Hypothetical protein. | 0.553 |
CIY_13470 | CIY_14310 | Hypothetical protein. | Alcohol dehydrogenase, class IV. | 0.491 |
CIY_13470 | CIY_15260 | Hypothetical protein. | Bacterial Ig-like domain (group 2)./Subtilase family; Belongs to the peptidase S8 family. | 0.653 |
CIY_13470 | CIY_16650 | Hypothetical protein. | ABC-type spermidine/putrescine transport system, permease component II. | 0.420 |
CIY_13480 | CIY_13450 | Isopentenyldiphosphate isomerase. | Predicted nucleotidyltransferases. | 0.584 |
CIY_13480 | CIY_13460 | Isopentenyldiphosphate isomerase. | Uncharacterized conserved protein. | 0.507 |
CIY_13480 | CIY_13470 | Isopentenyldiphosphate isomerase. | Hypothetical protein. | 0.773 |
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