node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CIY_17810 | CIY_17960 | CIY_17810 | CIY_17960 | Ribosomal protein HS6-type (S12/L30/L7a). | Translation elongation factor 2 (EF-2/EF-G). | 0.982 |
CIY_17810 | rplA | CIY_17810 | CIY_05340 | Ribosomal protein HS6-type (S12/L30/L7a). | Ribosomal protein L1, bacterial/chloroplast; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.995 |
CIY_17810 | rplB | CIY_17810 | CIY_03070 | Ribosomal protein HS6-type (S12/L30/L7a). | LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.994 |
CIY_17810 | rplD | CIY_17810 | CIY_03090 | Ribosomal protein HS6-type (S12/L30/L7a). | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | 0.993 |
CIY_17810 | rplM | CIY_17810 | CIY_32540 | Ribosomal protein HS6-type (S12/L30/L7a). | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.988 |
CIY_17810 | rplP | CIY_17810 | CIY_03030 | Ribosomal protein HS6-type (S12/L30/L7a). | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.990 |
CIY_17810 | rpsE | CIY_17810 | CIY_02930 | Ribosomal protein HS6-type (S12/L30/L7a). | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.990 |
CIY_17810 | rpsK | CIY_17810 | CIY_02830 | Ribosomal protein HS6-type (S12/L30/L7a). | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.990 |
CIY_17810 | rpsL | CIY_17810 | CIY_05290 | Ribosomal protein HS6-type (S12/L30/L7a). | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.997 |
CIY_17810 | rpsM | CIY_17810 | CIY_02840 | Ribosomal protein HS6-type (S12/L30/L7a). | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.993 |
CIY_17960 | CIY_17810 | CIY_17960 | CIY_17810 | Translation elongation factor 2 (EF-2/EF-G). | Ribosomal protein HS6-type (S12/L30/L7a). | 0.982 |
CIY_17960 | rplA | CIY_17960 | CIY_05340 | Translation elongation factor 2 (EF-2/EF-G). | Ribosomal protein L1, bacterial/chloroplast; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.981 |
CIY_17960 | rplB | CIY_17960 | CIY_03070 | Translation elongation factor 2 (EF-2/EF-G). | LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.992 |
CIY_17960 | rplD | CIY_17960 | CIY_03090 | Translation elongation factor 2 (EF-2/EF-G). | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | 0.979 |
CIY_17960 | rplM | CIY_17960 | CIY_32540 | Translation elongation factor 2 (EF-2/EF-G). | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.981 |
CIY_17960 | rplP | CIY_17960 | CIY_03030 | Translation elongation factor 2 (EF-2/EF-G). | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.980 |
CIY_17960 | rpsE | CIY_17960 | CIY_02930 | Translation elongation factor 2 (EF-2/EF-G). | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.986 |
CIY_17960 | rpsK | CIY_17960 | CIY_02830 | Translation elongation factor 2 (EF-2/EF-G). | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.979 |
CIY_17960 | rpsL | CIY_17960 | CIY_05290 | Translation elongation factor 2 (EF-2/EF-G). | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.991 |
CIY_17960 | rpsM | CIY_17960 | CIY_02840 | Translation elongation factor 2 (EF-2/EF-G). | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.982 |