Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CIY_29600 | CIY_29610 | CIY_29600 | CIY_29610 | Hypothetical protein. | Hypothetical protein. | 0.777 |
CIY_29600 | CIY_29620 | CIY_29600 | CIY_29620 | Hypothetical protein. | Deoxycytidylate deaminase. | 0.695 |
CIY_29600 | CIY_29630 | CIY_29600 | CIY_29630 | Hypothetical protein. | Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.627 |
CIY_29610 | CIY_29600 | CIY_29610 | CIY_29600 | Hypothetical protein. | Hypothetical protein. | 0.777 |
CIY_29610 | CIY_29620 | CIY_29610 | CIY_29620 | Hypothetical protein. | Deoxycytidylate deaminase. | 0.768 |
CIY_29610 | CIY_29630 | CIY_29610 | CIY_29630 | Hypothetical protein. | Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.745 |
CIY_29610 | atpA | CIY_29610 | CIY_29550 | Hypothetical protein. | ATP synthase F1 subcomplex alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | 0.741 |
CIY_29610 | atpD | CIY_29610 | CIY_08460 | Hypothetical protein. | ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.659 |
CIY_29610 | atpE | CIY_29610 | CIY_08420 | Hypothetical protein. | ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.718 |
CIY_29610 | atpE-2 | CIY_29610 | CIY_29580 | Hypothetical protein. | ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.718 |
CIY_29610 | atpG | CIY_29610 | CIY_08450 | Hypothetical protein. | ATP synthase, F1 gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.676 |
CIY_29610 | atpG-2 | CIY_29610 | CIY_29540 | Hypothetical protein. | ATP synthase F1 subcomplex gamma subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.676 |
CIY_29610 | atpH | CIY_29610 | CIY_29560 | Hypothetical protein. | ATP synthase F1 subcomplex delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.783 |
CIY_29620 | CIY_29600 | CIY_29620 | CIY_29600 | Deoxycytidylate deaminase. | Hypothetical protein. | 0.695 |
CIY_29620 | CIY_29610 | CIY_29620 | CIY_29610 | Deoxycytidylate deaminase. | Hypothetical protein. | 0.768 |
CIY_29620 | CIY_29630 | CIY_29620 | CIY_29630 | Deoxycytidylate deaminase. | Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | 0.780 |
CIY_29630 | CIY_29600 | CIY_29630 | CIY_29600 | Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Hypothetical protein. | 0.627 |
CIY_29630 | CIY_29610 | CIY_29630 | CIY_29610 | Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Hypothetical protein. | 0.745 |
CIY_29630 | CIY_29620 | CIY_29630 | CIY_29620 | Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | Deoxycytidylate deaminase. | 0.780 |
CIY_29630 | atpA | CIY_29630 | CIY_29550 | Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. | ATP synthase F1 subcomplex alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. | 0.402 |
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