Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CIY_19870 | CIY_30010 | CIY_19870 | CIY_30010 | Ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family. | Helix-turn-helix. | 0.792 |
CIY_19870 | rpmC | CIY_19870 | CIY_03020 | Ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family. | LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family. | 0.992 |
CIY_19870 | rpsB | CIY_19870 | CIY_20870 | Ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.997 |
CIY_19870 | rpsC | CIY_19870 | CIY_03040 | Ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.997 |
CIY_19870 | rpsD | CIY_19870 | CIY_02820 | Ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.997 |
CIY_19870 | rpsE | CIY_19870 | CIY_02930 | Ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.997 |
CIY_19870 | rpsJ | CIY_19870 | CIY_03110 | Ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.997 |
CIY_19870 | rpsL | CIY_19870 | CIY_05290 | Ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.997 |
CIY_19870 | rpsM | CIY_19870 | CIY_02840 | Ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family. | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.997 |
CIY_19870 | rpsS | CIY_19870 | CIY_03060 | Ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family. | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.997 |
CIY_30010 | CIY_19870 | CIY_30010 | CIY_19870 | Helix-turn-helix. | Ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family. | 0.792 |
CIY_30010 | rpmC | CIY_30010 | CIY_03020 | Helix-turn-helix. | LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family. | 0.812 |
CIY_30010 | rpsB | CIY_30010 | CIY_20870 | Helix-turn-helix. | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. | 0.789 |
CIY_30010 | rpsC | CIY_30010 | CIY_03040 | Helix-turn-helix. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.839 |
CIY_30010 | rpsD | CIY_30010 | CIY_02820 | Helix-turn-helix. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.815 |
CIY_30010 | rpsE | CIY_30010 | CIY_02930 | Helix-turn-helix. | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.821 |
CIY_30010 | rpsJ | CIY_30010 | CIY_03110 | Helix-turn-helix. | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.811 |
CIY_30010 | rpsL | CIY_30010 | CIY_05290 | Helix-turn-helix. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.789 |
CIY_30010 | rpsM | CIY_30010 | CIY_02840 | Helix-turn-helix. | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.796 |
CIY_30010 | rpsS | CIY_30010 | CIY_03060 | Helix-turn-helix. | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.827 |
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