STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH89249.1Ornithine cyclodeaminase. (333 aa)    
Predicted Functional Partners:
SEH89196.1
Serine-glyoxylate aminotransferase apoenzyme.
 
  
  0.971
SEH89233.1
D-3-hydroxyaspartate aldolase.
 
   
 0.948
SEH60462.1
Arginase; Belongs to the arginase family.
    
 0.939
SEH89215.1
Threonine dehydratase.
 
  
 0.932
SEH91261.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
 
 0.874
SEH95612.1
Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.795
SEH57622.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.786
SEI08047.1
Ornithine cyclodeaminase.
  
  
 
0.715
SEI02525.1
Proline racemase; Belongs to the proline racemase family.
 
  
 0.694
SEI02551.1
4-hydroxyproline epimerase; Belongs to the proline racemase family.
    
 0.648
Your Current Organism:
Paracoccus alkenifer
NCBI taxonomy Id: 65735
Other names: CIP 105684, DSM 11593, P. alkenifer, strain A901/1
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