STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH97637.1Hypothetical protein. (473 aa)    
Predicted Functional Partners:
SEH97689.1
Hypothetical protein.
 
     0.906
SEI08124.1
Outer membrane protein OmpU.
  
 
   0.830
SEH80290.1
Meckel syndrome type 1 protein.
  
     0.774
SEI12881.1
Catalase; Belongs to the catalase family.
   
 0.768
SEH86507.1
Hypothetical protein.
  
     0.768
SEH78304.1
SseB protein N-terminal domain-containing protein.
  
     0.761
SEH84180.1
Hypothetical protein.
  
     0.751
SEI08604.1
Hypothetical protein.
  
     0.745
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 
  0.743
SEH98771.1
Cell division and transport-associated protein TolA.
  
   
 0.735
Your Current Organism:
Paracoccus alkenifer
NCBI taxonomy Id: 65735
Other names: CIP 105684, DSM 11593, P. alkenifer, strain A901/1
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