STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEI11268.1Type IV secretion system protein VirB2. (109 aa)    
Predicted Functional Partners:
SEI11251.1
Type IV secretion system protein VirB4.
 
 
 0.978
SEI11260.1
Type IV secretion system protein VirB3.
 
  
 0.971
SEI11223.1
Type IV secretion system protein TrbL.
 
  
  0.970
SEI11243.1
P-type conjugative transfer protein TrbJ.
 
  
 0.967
SEI11215.1
Type IV secretion system protein VirB5.
 
  
 0.964
SEI11208.1
Type IV secretion system protein VirB9.
 
  
 0.959
SEI11275.1
Type IV secretion system protein VirB11.
 
  
 0.953
SEI11200.1
Type IV secretion system protein VirB10.
 
  
 0.946
SEH56834.1
Type IV secretion system protein VirB4.
 
 
 0.909
SEI09482.1
Type IV secretion system protein VirB4.
 
 
 0.909
Your Current Organism:
Paracoccus alkenifer
NCBI taxonomy Id: 65735
Other names: CIP 105684, DSM 11593, P. alkenifer, strain A901/1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.