STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OHV12844.1Tricarboxylate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)    
Predicted Functional Partners:
BH688_02060
Tricarboxylate transporter; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.947
OHV10646.1
C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.926
OHV12823.1
Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.878
OHV08826.1
C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.878
OHV13941.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.877
BH688_02350
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.877
OHV13107.1
4-hydroxythreonine-4-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the PdxA family.
 
     0.682
BH688_01945
Tricarboxylic transporter; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.649
OHV12842.1
Flagellar biosynthesis protein FlgA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.603
OHV12880.1
Tricarboxylic transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.587
Your Current Organism:
Kushneria sp. YCWA18
NCBI taxonomy Id: 657387
Other names: K. sp. YCWA18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.