STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK17539.1Hypothetical protein. (259 aa)    
Predicted Functional Partners:
acnA
Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
       0.652
SEK92153.1
Protein of unknown function.
 
     0.553
SEK17536.1
Hypothetical protein.
       0.508
glnL_1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
     0.451
ydaF_1
Ribosomal-protein-alanine N-acetyltransferase.
  
     0.414
Your Current Organism:
Pacificibacter marinus
NCBI taxonomy Id: 658057
Other names: CCUG 58403, DSM 25228, KCTC 22805, P. marinus, Pacificibacter marinus (Jung et al. 2011) Park et al. 2015, Roseovarius marinus, Roseovarius marinus Jung et al. 2011, Roseovarius sp. HDW-9, strain HDW-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.