STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
takPTRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein. (323 aa)    
Predicted Functional Partners:
SEK55085.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
    0.937
siaT_24
TRAP transporter, DctM subunit.
 
    0.911
SEL09651.1
Indolepyruvate ferredoxin oxidoreductase beta subunit.
 
     0.767
SEL09625.1
Indolepyruvate ferredoxin oxidoreductase alpha subunit.
 
     0.735
kynB
Kynurenine formamidase.
  
     0.684
SEK85978.1
Tat (twin-arginine translocation) pathway signal sequence; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
   
 0.624
slyA_3
DNA-binding transcriptional regulator, MarR family.
  
     0.607
siaT_11
TRAP transporter, DctM subunit.
 
     0.562
crtN
Phytoene dehydrogenase-related protein.
  
     0.558
siaT_21
TRAP transporter, DctM subunit.
 
     0.547
Your Current Organism:
Pacificibacter marinus
NCBI taxonomy Id: 658057
Other names: CCUG 58403, DSM 25228, KCTC 22805, P. marinus, Pacificibacter marinus (Jung et al. 2011) Park et al. 2015, Roseovarius marinus, Roseovarius marinus Jung et al. 2011, Roseovarius sp. HDW-9, strain HDW-9
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.