STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK65969.1Hypothetical protein. (105 aa)    
Predicted Functional Partners:
recD2
Exodeoxyribonuclease-5.
  
     0.775
SEL17476.1
Hypothetical protein.
  
     0.771
SEK26479.1
Hypothetical protein.
  
     0.770
SEK42161.1
Protein RodZ, contains Xre-like HTH and DUF4115 domains.
  
     0.770
SEK49896.1
Membrane associated serine protease, rhomboid family.
  
     0.770
SEK52045.1
SseB protein N-terminal domain-containing protein.
  
     0.769
SEK59418.1
Hypothetical protein.
  
     0.765
SEK24536.1
Hypothetical protein.
  
     0.762
acpP_2
Acyl carrier protein.
  
     0.756
SEK60889.1
Hypothetical protein.
  
     0.750
Your Current Organism:
Pacificibacter marinus
NCBI taxonomy Id: 658057
Other names: CCUG 58403, DSM 25228, KCTC 22805, P. marinus, Pacificibacter marinus (Jung et al. 2011) Park et al. 2015, Roseovarius marinus, Roseovarius marinus Jung et al. 2011, Roseovarius sp. HDW-9, strain HDW-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.