STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yiaO_8Tripartite ATP-independent transporter solute receptor, DctP family. (323 aa)    
Predicted Functional Partners:
siaT_16
TRAP transporter, DctM subunit.
    0.928
SEK77147.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
    0.901
ydfH_6
Transcriptional regulator, GntR family.
 
     0.875
siaT_14
C4-dicarboxylate transporter, DctM subunit.
 
    0.780
siaT_13
TRAP transporter, DctM subunit.
 
    0.778
siaT_27
TRAP transporter, DctM subunit.
 
    0.758
siaT_22
TRAP transporter, DctM subunit.
 
    0.754
siaT_18
C4-dicarboxylate transporter, DctM subunit.
    0.739
siaT_5
TRAP transporter, DctM subunit.
 
    0.705
siaT_3
TRAP transporter, DctM subunit.
 
    0.698
Your Current Organism:
Pacificibacter marinus
NCBI taxonomy Id: 658057
Other names: CCUG 58403, DSM 25228, KCTC 22805, P. marinus, Pacificibacter marinus (Jung et al. 2011) Park et al. 2015, Roseovarius marinus, Roseovarius marinus Jung et al. 2011, Roseovarius sp. HDW-9, strain HDW-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.