STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbiXSirohydrochlorin cobaltochelatase. (419 aa)    
Predicted Functional Partners:
cysG
uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase.
  
 
 0.998
cobJ
Cobalt-precorrin 5A hydrolase / precorrin-3B C17-methyltransferase.
  
 0.998
cobI
Precorrin-2/cobalt-factor-2 C20-methyltransferase.
 
  
 0.994
cobL
precorrin-6Y C5,15-methyltransferase (decarboxylating).
 
  
 0.993
cobA
uroporphyrin-III C-methyltransferase; Belongs to the precorrin methyltransferase family.
 
 0.975
cobH
precorrin-8X methylmutase.
   
 0.934
cobM
Precorrin-4/cobalt-precorrin-4 C11-methyltransferase.
 
   
 0.925
cbiD
cobalt-precorrin-5B (C1)-methyltransferase; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
 
   
 0.854
SEK90465.1
Hypothetical protein.
       0.848
cobN
Cobaltochelatase CobN subunit.
 
   
 0.829
Your Current Organism:
Pacificibacter marinus
NCBI taxonomy Id: 658057
Other names: CCUG 58403, DSM 25228, KCTC 22805, P. marinus, Pacificibacter marinus (Jung et al. 2011) Park et al. 2015, Roseovarius marinus, Roseovarius marinus Jung et al. 2011, Roseovarius sp. HDW-9, strain HDW-9
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