STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL04554.1HemY protein. (497 aa)    
Predicted Functional Partners:
SEL04536.1
Hypothetical protein.
 
   
 0.913
SEK27088.1
Methyltransferase domain-containing protein.
  
     0.751
SEL04499.1
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
     0.738
SEL04033.1
ATP-dependent helicase/nuclease subunit B.
  
     0.726
ftsQ
Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.724
SEK97028.1
Cytochrome c-type biogenesis protein CcmH.
  
     0.692
SEL25625.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.691
SEK17871.1
Cell division protein ZapA.
  
    0.662
SEK69022.1
Hypothetical protein.
  
     0.657
SEL18219.1
Tetratricopeptide repeat-containing protein.
  
     0.649
Your Current Organism:
Pacificibacter marinus
NCBI taxonomy Id: 658057
Other names: CCUG 58403, DSM 25228, KCTC 22805, P. marinus, Pacificibacter marinus (Jung et al. 2011) Park et al. 2015, Roseovarius marinus, Roseovarius marinus Jung et al. 2011, Roseovarius sp. HDW-9, strain HDW-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.