STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjfF_1Monosaccharide ABC transporter membrane protein, CUT2 family; Belongs to the binding-protein-dependent transport system permease family. (377 aa)    
Predicted Functional Partners:
rbsA_9
Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
  0.971
rbsB_6
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
 
  0.939
rbsB_2
Ribose transport system substrate-binding protein.
  
  0.800
iolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Belongs to the TPP enzyme family.
 
    0.795
iolC_4
5-dehydro-2-deoxygluconokinase.
    0.787
iolE_4
2-keto-myo-inositol dehydratase.
 
    0.781
iolB_2
5-deoxyglucuronate isomerase.
 
    0.769
ytfQ_1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
  
  0.760
rbsA_3
Mannose ABC transporter ATP-binding protein.
 
  0.757
rbsA_8
Erythritol ABC transporter ATP-binding protein.
  
  0.722
Your Current Organism:
Pacificibacter marinus
NCBI taxonomy Id: 658057
Other names: CCUG 58403, DSM 25228, KCTC 22805, P. marinus, Pacificibacter marinus (Jung et al. 2011) Park et al. 2015, Roseovarius marinus, Roseovarius marinus Jung et al. 2011, Roseovarius sp. HDW-9, strain HDW-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.