STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL08168.1Biopolymer transport protein ExbD. (132 aa)    
Predicted Functional Partners:
SEL08192.1
Outer membrane transport energization protein TonB.
 
 
 0.981
exbB_3
Outer membrane transport energization protein ExbB.
 
 
 0.973
SEL08103.1
Hypothetical protein.
 
     0.967
SEL08144.1
Outer membrane transport energization protein ExbD.
 
     0.956
hemS
Putative hemin transport protein.
 
   
 0.939
hmuV_2
Iron complex transport system ATP-binding protein; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
   
 0.925
tdhA
Hemoglobin/transferrin/lactoferrin receptor protein.
 
  
 0.916
hmuT
Iron complex transport system substrate-binding protein.
 
  
 0.900
hmuU_3
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
     0.826
SEL08076.1
Hypothetical protein.
       0.773
Your Current Organism:
Pacificibacter marinus
NCBI taxonomy Id: 658057
Other names: CCUG 58403, DSM 25228, KCTC 22805, P. marinus, Pacificibacter marinus (Jung et al. 2011) Park et al. 2015, Roseovarius marinus, Roseovarius marinus Jung et al. 2011, Roseovarius sp. HDW-9, strain HDW-9
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.