STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betB_3Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family. (457 aa)    
Predicted Functional Partners:
mdh_2
4-hydroxybutyrate dehydrogenase.
  0.954
glnA_2
Glutamine synthetase.
 
  
  0.949
gltB
Glutamate synthase (NADPH) large subunit.
  
 
 0.896
SEL22157.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
     0.895
SEL22190.1
Tat (twin-arginine translocation) pathway signal sequence.
 
     0.881
siaT_19
TRAP transporter, DctM subunit.
 
     0.847
SEL22143.1
Predicted N-formylglutamate amidohydrolase.
 
     0.844
SEL22124.1
Transcriptional regulator, RpiR family.
 
  
  0.839
putA
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
 
0.769
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.725
Your Current Organism:
Pacificibacter marinus
NCBI taxonomy Id: 658057
Other names: CCUG 58403, DSM 25228, KCTC 22805, P. marinus, Pacificibacter marinus (Jung et al. 2011) Park et al. 2015, Roseovarius marinus, Roseovarius marinus Jung et al. 2011, Roseovarius sp. HDW-9, strain HDW-9
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