STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdlAL-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (365 aa)    
Predicted Functional Partners:
yjmD
2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
 
     0.909
kduD_2
2-deoxy-D-gluconate 3-dehydrogenase.
  
  0.906
rbsA_10
Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
       0.773
rbsC_9
Monosaccharide ABC transporter membrane protein, CUT2 family; Belongs to the binding-protein-dependent transport system permease family.
       0.773
rbsC_8
Monosaccharide ABC transporter membrane protein, CUT2 family; Belongs to the binding-protein-dependent transport system permease family.
       0.773
SEL34050.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
 
  
 0.755
aldA_3
Lactaldehyde dehydrogenase / glycolaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
  0.709
SEL35166.1
2-keto-3-deoxygalactonate kinase.
 
 0.617
yvoA
Transcriptional regulator, GntR family.
 
     0.598
ytfQ_1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
       0.553
Your Current Organism:
Pacificibacter marinus
NCBI taxonomy Id: 658057
Other names: CCUG 58403, DSM 25228, KCTC 22805, P. marinus, Pacificibacter marinus (Jung et al. 2011) Park et al. 2015, Roseovarius marinus, Roseovarius marinus Jung et al. 2011, Roseovarius sp. HDW-9, strain HDW-9
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.