STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livH_5Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family. (651 aa)    
Predicted Functional Partners:
artM
Urea transport system ATP-binding protein.
 
 0.999
SEL35483.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
amiC
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
 
 0.999
livF_5
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.
 
 
 0.998
livF_3
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.
 
 0.901
livF_4
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.
 
 0.900
livF_1
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.
 
 0.896
livF_2
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.
 
 0.886
SEK86892.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
  0.848
SEL24833.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
  0.799
Your Current Organism:
Pacificibacter marinus
NCBI taxonomy Id: 658057
Other names: CCUG 58403, DSM 25228, KCTC 22805, P. marinus, Pacificibacter marinus (Jung et al. 2011) Park et al. 2015, Roseovarius marinus, Roseovarius marinus Jung et al. 2011, Roseovarius sp. HDW-9, strain HDW-9
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.