STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGN41362.1Stage V sporulation protein T. (181 aa)    
Predicted Functional Partners:
EGN41262.1
Sporulation transcriptional regulator SpoIIID.
  
  
 0.899
EPC05219.1
Stage II sporulation protein E.
 
   
 0.871
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
   
 0.866
EGN39958.1
Stage III sporulation protein AA.
  
   
 0.856
EGN41077.1
sigma-E processing peptidase SpoIIGA.
  
   
 0.850
EGN40284.1
Stage 0 sporulation protein A.
  
   
 0.850
EGN42551.1
Two-component system, response regulator, stage 0 sporulation protein A.
  
   
 0.849
EGN43299.1
Stage V sporulation protein AD.
  
   
 0.825
EGN30698.1
Sporulation protein YabP.
 
     0.813
EGN41079.1
RNA polymerase sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
   
 0.810
Your Current Organism:
Lachnospiraceae bacterium 3157FAACT1
NCBI taxonomy Id: 658086
Other names: L. bacterium 3_1_57FAA_CT1, Lachnospiraceae bacterium 3_1_57FAA_CT1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.