EGN40845.1 protein (Lachnospiraceae bacterium 3157FAACT1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EGN40845.1

Spermidine/putrescine transport system substrate-binding protein. (353 aa)

Predicted Functional Partners:

EGN40846.1

0.999

potA

0.999

EGN40847.1

0.987

EGN33753.1

0.938

EGN40849.1

0.752

EGN34515.1

0.721

EGN33754.1

0.694

EPC05387.1

0.662

EGN40946.1

0.661

EGN31341.1

0.515

Your Current Organism:

Lachnospiraceae bacterium 3157FAACT1

NCBI taxonomy Id: 658086
Other names: L. bacterium 3_1_57FAA_CT1, Lachnospiraceae bacterium 3_1_57FAA_CT1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EGN31341.1	EGN40845.1	HMPREF0994_05987	HMPREF0994_02446	Hypothetical protein.	Spermidine/putrescine transport system substrate-binding protein.	0.515
EGN31341.1	potA	HMPREF0994_05987	HMPREF0994_02449	Hypothetical protein.	Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	0.555
EGN33753.1	EGN33754.1	HMPREF0994_05044	HMPREF0994_05045	iron(III) transport system permease.	Spermidine/putrescine transport system ATP-binding protein.	0.994
EGN33753.1	EGN34515.1	HMPREF0994_05044	HMPREF0994_04888	iron(III) transport system permease.	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.716
EGN33753.1	EGN40845.1	HMPREF0994_05044	HMPREF0994_02446	iron(III) transport system permease.	Spermidine/putrescine transport system substrate-binding protein.	0.938
EGN33753.1	EGN40946.1	HMPREF0994_05044	HMPREF0994_02547	iron(III) transport system permease.	Multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.716
EGN33753.1	EPC05387.1	HMPREF0994_05044	HMPREF0994_07055	iron(III) transport system permease.	Exonuclease SbcC.	0.532
EGN33753.1	potA	HMPREF0994_05044	HMPREF0994_02449	iron(III) transport system permease.	Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	0.974
EGN33754.1	EGN33753.1	HMPREF0994_05045	HMPREF0994_05044	Spermidine/putrescine transport system ATP-binding protein.	iron(III) transport system permease.	0.994
EGN33754.1	EGN40845.1	HMPREF0994_05045	HMPREF0994_02446	Spermidine/putrescine transport system ATP-binding protein.	Spermidine/putrescine transport system substrate-binding protein.	0.694
EGN33754.1	EGN40846.1	HMPREF0994_05045	HMPREF0994_02447	Spermidine/putrescine transport system ATP-binding protein.	Spermidine/putrescine transport system permease; Overlaps another CDS with the same product name.	0.661
EGN33754.1	EGN40847.1	HMPREF0994_05045	HMPREF0994_02448	Spermidine/putrescine transport system ATP-binding protein.	Spermidine/putrescine transport system permease; Overlaps another CDS with the same product name.	0.752
EGN33754.1	potA	HMPREF0994_05045	HMPREF0994_02449	Spermidine/putrescine transport system ATP-binding protein.	Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	0.700
EGN34515.1	EGN33753.1	HMPREF0994_04888	HMPREF0994_05044	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	iron(III) transport system permease.	0.716
EGN34515.1	EGN40845.1	HMPREF0994_04888	HMPREF0994_02446	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Spermidine/putrescine transport system substrate-binding protein.	0.721
EGN34515.1	EGN40846.1	HMPREF0994_04888	HMPREF0994_02447	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Spermidine/putrescine transport system permease; Overlaps another CDS with the same product name.	0.681
EGN34515.1	EGN40847.1	HMPREF0994_04888	HMPREF0994_02448	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Spermidine/putrescine transport system permease; Overlaps another CDS with the same product name.	0.775
EGN34515.1	potA	HMPREF0994_04888	HMPREF0994_02449	Maltose/maltodextrin transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.	0.712
EGN40845.1	EGN31341.1	HMPREF0994_02446	HMPREF0994_05987	Spermidine/putrescine transport system substrate-binding protein.	Hypothetical protein.	0.515
EGN40845.1	EGN33753.1	HMPREF0994_02446	HMPREF0994_05044	Spermidine/putrescine transport system substrate-binding protein.	iron(III) transport system permease.	0.938