STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGN40241.1Diguanylate cyclase (GGDEF) domain-containing protein. (637 aa)    
Predicted Functional Partners:
EGN32320.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.936
EGN41972.1
PAS domain S-box protein.
 
 0.910
EGN41469.1
PAS domain S-box protein.
 
 0.888
EGN42910.1
Hypothetical protein.
 
  0.859
EGN32319.1
Hypothetical protein.
 
 
 0.849
EGN32276.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
  0.809
EPC05353.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
  0.809
EPC05334.1
Hypothetical protein.
  
 
 0.797
EGN39035.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
  0.795
EGN35750.1
Hypothetical protein.
  
 
 0.795
Your Current Organism:
Lachnospiraceae bacterium 3157FAACT1
NCBI taxonomy Id: 658086
Other names: L. bacterium 3_1_57FAA_CT1, Lachnospiraceae bacterium 3_1_57FAA_CT1
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