Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EGN35827.1 | EGN43485.1 | HMPREF0994_04517 | HMPREF0994_00776 | glutamine-tRNA ligase. | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | 0.413 |
EGN35827.1 | asnS | HMPREF0994_04517 | HMPREF0994_01881 | glutamine-tRNA ligase. | asparaginyl-tRNA synthetase. | 0.822 |
EGN35827.1 | aspS | HMPREF0994_04517 | HMPREF0994_00111 | glutamine-tRNA ligase. | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.676 |
EGN35827.1 | aspS-2 | HMPREF0994_04517 | HMPREF0994_01730 | glutamine-tRNA ligase. | aspartate-tRNA(Asn) ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 2 subfamily. | 0.815 |
EGN35827.1 | aspS-3 | HMPREF0994_04517 | HMPREF0994_04575 | glutamine-tRNA ligase. | aspartate-tRNA(Asn) ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 2 subfamily. | 0.790 |
EGN35827.1 | gatA | HMPREF0994_04517 | HMPREF0994_04573 | glutamine-tRNA ligase. | glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). | 0.990 |
EGN35827.1 | gatB | HMPREF0994_04517 | HMPREF0994_04572 | glutamine-tRNA ligase. | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. | 0.989 |
EGN35827.1 | gatC | HMPREF0994_04517 | HMPREF0994_04574 | glutamine-tRNA ligase. | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. | 0.941 |
EGN35827.1 | rpsZ | HMPREF0994_04517 | HMPREF0994_06365 | glutamine-tRNA ligase. | 30S ribosomal protein S14 type Z; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. | 0.977 |
EGN43485.1 | EGN35827.1 | HMPREF0994_00776 | HMPREF0994_04517 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | glutamine-tRNA ligase. | 0.413 |
EGN43485.1 | asnS | HMPREF0994_00776 | HMPREF0994_01881 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | asparaginyl-tRNA synthetase. | 0.438 |
EGN43485.1 | aspS | HMPREF0994_00776 | HMPREF0994_00111 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.881 |
EGN43485.1 | gatC | HMPREF0994_00776 | HMPREF0994_04574 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. | 0.858 |
EGN43485.1 | gltX | HMPREF0994_00776 | HMPREF0994_02431 | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.480 |
asnS | EGN35827.1 | HMPREF0994_01881 | HMPREF0994_04517 | asparaginyl-tRNA synthetase. | glutamine-tRNA ligase. | 0.822 |
asnS | EGN43485.1 | HMPREF0994_01881 | HMPREF0994_00776 | asparaginyl-tRNA synthetase. | Pyruvate:ferredoxin (flavodoxin) oxidoreductase. | 0.438 |
asnS | aspS | HMPREF0994_01881 | HMPREF0994_00111 | asparaginyl-tRNA synthetase. | aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. | 0.854 |
asnS | gatA | HMPREF0994_01881 | HMPREF0994_04573 | asparaginyl-tRNA synthetase. | glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). | 0.960 |
asnS | gatB | HMPREF0994_01881 | HMPREF0994_04572 | asparaginyl-tRNA synthetase. | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. | 0.972 |
asnS | gatC | HMPREF0994_01881 | HMPREF0994_04574 | asparaginyl-tRNA synthetase. | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. | 0.942 |
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