Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG72422.1 | SHG72572.1 | SAMN04488135_101132 | SAMN04488135_101135 | Peptidase family M48. | Uncharacterized membrane protein. | 0.477 |
SHG72422.1 | SHG72602.1 | SAMN04488135_101132 | SAMN04488135_101136 | Peptidase family M48. | tRNA-processing RNAse BN. | 0.420 |
SHG72422.1 | aroC | SAMN04488135_101132 | SAMN04488135_101133 | Peptidase family M48. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.917 |
SHG72422.1 | polA | SAMN04488135_101132 | SAMN04488135_11743 | Peptidase family M48. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.505 |
SHG72422.1 | selO | SAMN04488135_101132 | SAMN04488135_101134 | Peptidase family M48. | Uncharacterized conserved protein YdiU, UPF0061 family; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family. | 0.431 |
SHG72572.1 | SHG72422.1 | SAMN04488135_101135 | SAMN04488135_101132 | Uncharacterized membrane protein. | Peptidase family M48. | 0.477 |
SHG72572.1 | SHG72602.1 | SAMN04488135_101135 | SAMN04488135_101136 | Uncharacterized membrane protein. | tRNA-processing RNAse BN. | 0.626 |
SHG72572.1 | SHG72645.1 | SAMN04488135_101135 | SAMN04488135_101137 | Uncharacterized membrane protein. | CBS domain-containing protein. | 0.618 |
SHG72572.1 | aroC | SAMN04488135_101135 | SAMN04488135_101133 | Uncharacterized membrane protein. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.656 |
SHG72572.1 | selO | SAMN04488135_101135 | SAMN04488135_101134 | Uncharacterized membrane protein. | Uncharacterized conserved protein YdiU, UPF0061 family; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family. | 0.861 |
SHG72602.1 | SHG72422.1 | SAMN04488135_101136 | SAMN04488135_101132 | tRNA-processing RNAse BN. | Peptidase family M48. | 0.420 |
SHG72602.1 | SHG72572.1 | SAMN04488135_101136 | SAMN04488135_101135 | tRNA-processing RNAse BN. | Uncharacterized membrane protein. | 0.626 |
SHG72602.1 | SHG72645.1 | SAMN04488135_101136 | SAMN04488135_101137 | tRNA-processing RNAse BN. | CBS domain-containing protein. | 0.863 |
SHG72602.1 | aroC | SAMN04488135_101136 | SAMN04488135_101133 | tRNA-processing RNAse BN. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.453 |
SHG72602.1 | asd | SAMN04488135_101136 | SAMN04488135_101117 | tRNA-processing RNAse BN. | Aspartate semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.440 |
SHG72602.1 | polA | SAMN04488135_101136 | SAMN04488135_11743 | tRNA-processing RNAse BN. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.405 |
SHG72602.1 | selO | SAMN04488135_101136 | SAMN04488135_101134 | tRNA-processing RNAse BN. | Uncharacterized conserved protein YdiU, UPF0061 family; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family. | 0.564 |
SHG72645.1 | SHG72572.1 | SAMN04488135_101137 | SAMN04488135_101135 | CBS domain-containing protein. | Uncharacterized membrane protein. | 0.618 |
SHG72645.1 | SHG72602.1 | SAMN04488135_101137 | SAMN04488135_101136 | CBS domain-containing protein. | tRNA-processing RNAse BN. | 0.863 |
SHG72645.1 | aroC | SAMN04488135_101137 | SAMN04488135_101133 | CBS domain-containing protein. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.448 |
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