STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG73641.1Tight adherence protein B. (281 aa)    
Predicted Functional Partners:
SHG73596.1
Tight adherence protein C.
 
  
 0.998
SHG73684.1
Pilus assembly protein CpaF.
 
  
 0.994
SHG73772.1
Pilus assembly protein CpaB.
 
  
 0.993
SHG73728.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
 
  
 0.962
SHG73906.1
Hypothetical protein.
 
  
 0.958
SHG73555.1
Hypothetical protein.
 
     0.944
SHI28061.1
Hypothetical protein.
  
  
 0.796
SHI11765.1
Type IV secretion system protein VirB11; Part of the Type IV secretion system. Belongs to the GSP E family.
 
     0.794
SHG73860.1
Hypothetical protein.
       0.758
SHG73817.1
Hypothetical protein.
       0.722
Your Current Organism:
Candidimonas bauzanensis
NCBI taxonomy Id: 658167
Other names: Alcaligenaceae bacterium BZ59, C. bauzanensis, CGMCC 1.10190, Candidimonas bauzanensis Zhang et al. 2012, DSM 22805, LMG 26046, LMG:26046, strain BZ59
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.