Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG66580.1 | SHH68063.1 | SAMN04488135_1011 | SAMN04488135_104163 | Citrate synthase. | Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | 0.764 |
SHG66580.1 | SHI26093.1 | SAMN04488135_1011 | SAMN04488135_1174 | Citrate synthase. | Succinate dehydrogenase subunit C. | 0.654 |
SHG66580.1 | SHI26102.1 | SAMN04488135_1011 | SAMN04488135_1175 | Citrate synthase. | Succinate dehydrogenase / fumarate reductase membrane anchor subunit. | 0.522 |
SHG66580.1 | SHI26108.1 | SAMN04488135_1011 | SAMN04488135_1176 | Citrate synthase. | Succinate dehydrogenase subunit A; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. | 0.712 |
SHG66580.1 | SHI26116.1 | SAMN04488135_1011 | SAMN04488135_1177 | Citrate synthase. | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | 0.906 |
SHG66580.1 | SHI26145.1 | SAMN04488135_1011 | SAMN04488135_11712 | Citrate synthase. | 2-oxoglutarate dehydrogenase E1 component. | 0.761 |
SHG66580.1 | SHI26152.1 | SAMN04488135_1011 | SAMN04488135_11713 | Citrate synthase. | 2-oxoglutarate dehydrogenase E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). | 0.764 |
SHG66580.1 | sucC | SAMN04488135_1011 | SAMN04488135_101214 | Citrate synthase. | succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.970 |
SHG66580.1 | sucD | SAMN04488135_1011 | SAMN04488135_101213 | Citrate synthase. | succinyl-CoA synthetase alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.862 |
SHG75554.1 | SHH68063.1 | SAMN04488135_101201 | SAMN04488135_104163 | Citrate synthase. | Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | 0.948 |
SHG75554.1 | SHI26093.1 | SAMN04488135_101201 | SAMN04488135_1174 | Citrate synthase. | Succinate dehydrogenase subunit C. | 0.651 |
SHG75554.1 | SHI26102.1 | SAMN04488135_101201 | SAMN04488135_1175 | Citrate synthase. | Succinate dehydrogenase / fumarate reductase membrane anchor subunit. | 0.518 |
SHG75554.1 | SHI26108.1 | SAMN04488135_101201 | SAMN04488135_1176 | Citrate synthase. | Succinate dehydrogenase subunit A; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. | 0.709 |
SHG75554.1 | SHI26116.1 | SAMN04488135_101201 | SAMN04488135_1177 | Citrate synthase. | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | 0.905 |
SHG75554.1 | SHI26145.1 | SAMN04488135_101201 | SAMN04488135_11712 | Citrate synthase. | 2-oxoglutarate dehydrogenase E1 component. | 0.758 |
SHG75554.1 | SHI26152.1 | SAMN04488135_101201 | SAMN04488135_11713 | Citrate synthase. | 2-oxoglutarate dehydrogenase E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). | 0.813 |
SHG75554.1 | sucC | SAMN04488135_101201 | SAMN04488135_101214 | Citrate synthase. | succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.974 |
SHG75554.1 | sucD | SAMN04488135_101201 | SAMN04488135_101213 | Citrate synthase. | succinyl-CoA synthetase alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.879 |
SHH68063.1 | SHG66580.1 | SAMN04488135_104163 | SAMN04488135_1011 | Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | Citrate synthase. | 0.764 |
SHH68063.1 | SHG75554.1 | SAMN04488135_104163 | SAMN04488135_101201 | Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | Citrate synthase. | 0.948 |
page 1 of 6