STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH10631.1Carboxymuconolactone decarboxylase family protein. (170 aa)    
Predicted Functional Partners:
SHH10706.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.776
SHH10670.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.767
SHH19100.1
Aldoxime dehydratase.
  
     0.632
SHH10594.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
       0.625
SHH12267.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
 
  0.547
SHH62763.1
NmrA-like family protein.
 
     0.546
SHI13694.1
3-carboxy-cis,cis-muconate cycloisomerase.
  
  
  0.518
SHH10737.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.488
SHH67339.1
acyl-CoA dehydrogenase.
 
     0.415
SHH70018.1
Kynurenine formamidase.
 
     0.415
Your Current Organism:
Candidimonas bauzanensis
NCBI taxonomy Id: 658167
Other names: Alcaligenaceae bacterium BZ59, C. bauzanensis, CGMCC 1.10190, Candidimonas bauzanensis Zhang et al. 2012, DSM 22805, LMG 26046, LMG:26046, strain BZ59
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