Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG67421.1 | SHG87349.1 | SAMN04488135_10118 | SAMN04488135_101485 | Diguanylate cyclase (GGDEF) domain-containing protein. | Hypothetical protein. | 0.999 |
SHG67421.1 | SHH39391.1 | SAMN04488135_10118 | SAMN04488135_103112 | Diguanylate cyclase (GGDEF) domain-containing protein. | Two-component system, chemotaxis family, CheB/CheR fusion protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.999 |
SHG67421.1 | SHH39431.1 | SAMN04488135_10118 | SAMN04488135_103113 | Diguanylate cyclase (GGDEF) domain-containing protein. | PAS domain S-box-containing protein. | 0.999 |
SHG67421.1 | SHH41622.1 | SAMN04488135_10118 | SAMN04488135_103171 | Diguanylate cyclase (GGDEF) domain-containing protein. | Periplasmic sensor diguanylate cyclase/phosphodiesterase. | 0.992 |
SHG67421.1 | SHH46915.1 | SAMN04488135_10118 | SAMN04488135_103297 | Diguanylate cyclase (GGDEF) domain-containing protein. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.974 |
SHG67421.1 | SHH47184.1 | SAMN04488135_10118 | SAMN04488135_103303 | Diguanylate cyclase (GGDEF) domain-containing protein. | PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. | 0.972 |
SHG67421.1 | SHI08732.1 | SAMN04488135_10118 | SAMN04488135_108170 | Diguanylate cyclase (GGDEF) domain-containing protein. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.975 |
SHG67421.1 | SHI09156.1 | SAMN04488135_10118 | SAMN04488135_108197 | Diguanylate cyclase (GGDEF) domain-containing protein. | EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant). | 0.978 |
SHG67421.1 | SHI20727.1 | SAMN04488135_10118 | SAMN04488135_11340 | Diguanylate cyclase (GGDEF) domain-containing protein. | PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. | 0.998 |
SHG67421.1 | SHI22621.1 | SAMN04488135_10118 | SAMN04488135_11446 | Diguanylate cyclase (GGDEF) domain-containing protein. | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s). | 0.998 |
SHG87349.1 | SHG67421.1 | SAMN04488135_101485 | SAMN04488135_10118 | Hypothetical protein. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.999 |
SHG87349.1 | SHH39391.1 | SAMN04488135_101485 | SAMN04488135_103112 | Hypothetical protein. | Two-component system, chemotaxis family, CheB/CheR fusion protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.999 |
SHG87349.1 | SHH39431.1 | SAMN04488135_101485 | SAMN04488135_103113 | Hypothetical protein. | PAS domain S-box-containing protein. | 0.999 |
SHG87349.1 | SHH41622.1 | SAMN04488135_101485 | SAMN04488135_103171 | Hypothetical protein. | Periplasmic sensor diguanylate cyclase/phosphodiesterase. | 0.994 |
SHG87349.1 | SHH46915.1 | SAMN04488135_101485 | SAMN04488135_103297 | Hypothetical protein. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.978 |
SHG87349.1 | SHH47184.1 | SAMN04488135_101485 | SAMN04488135_103303 | Hypothetical protein. | PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. | 0.995 |
SHG87349.1 | SHI08732.1 | SAMN04488135_101485 | SAMN04488135_108170 | Hypothetical protein. | Diguanylate cyclase (GGDEF) domain-containing protein. | 0.978 |
SHG87349.1 | SHI09156.1 | SAMN04488135_101485 | SAMN04488135_108197 | Hypothetical protein. | EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant). | 0.978 |
SHG87349.1 | SHI20727.1 | SAMN04488135_101485 | SAMN04488135_11340 | Hypothetical protein. | PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. | 0.999 |
SHG87349.1 | SHI22621.1 | SAMN04488135_101485 | SAMN04488135_11446 | Hypothetical protein. | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s). | 0.999 |
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