STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH36227.1TRAP transporter, DctM subunit. (439 aa)    
Predicted Functional Partners:
SHH36129.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
 
  
 0.921
SHH36175.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  
 0.919
SHH36274.1
FAD dependent oxidoreductase.
       0.773
SHH36318.1
Enoyl-CoA hydratase/carnithine racemase.
       0.773
SHH36374.1
Propionate CoA-transferase; CoA transferase having broad substrate specificity for short- chain acyl-CoA thioesters with the activity decreasing when the length of the carboxylic acid chain exceeds four carbons. Belongs to the 3-oxoacid CoA-transferase family.
       0.773
SHG71543.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
  
 0.767
SHH54895.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.766
SHI07666.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.765
SHI17817.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.759
SHH11913.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.747
Your Current Organism:
Candidimonas bauzanensis
NCBI taxonomy Id: 658167
Other names: Alcaligenaceae bacterium BZ59, C. bauzanensis, CGMCC 1.10190, Candidimonas bauzanensis Zhang et al. 2012, DSM 22805, LMG 26046, LMG:26046, strain BZ59
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