STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH52565.1Outer membrane protein OmpA. (220 aa)    
Predicted Functional Partners:
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 0.903
SHI16706.1
Hypothetical protein.
  
 0.758
SHI33186.1
Membrane-bound lytic murein transglycosylase D.
 
 
 
 0.756
SHI27338.1
OmpA family protein.
  
 
 0.753
SHH87516.1
Periplasmic chaperone for outer membrane proteins Skp; Belongs to the skp family.
 
 
 0.736
lolA
Outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
 
 0.669
rpmI
LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family.
  
   0.668
SHI19369.1
Chemotaxis protein MotB.
    
 0.667
SHI03354.1
Chemotaxis protein MotB.
  
 
0.661
rpsF
SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.
  
   0.647
Your Current Organism:
Candidimonas bauzanensis
NCBI taxonomy Id: 658167
Other names: Alcaligenaceae bacterium BZ59, C. bauzanensis, CGMCC 1.10190, Candidimonas bauzanensis Zhang et al. 2012, DSM 22805, LMG 26046, LMG:26046, strain BZ59
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