Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHG85713.1 | SHH43040.1 | SAMN04488135_101436 | SAMN04488135_103210 | phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). | phenylacetate-CoA ligase. | 0.888 |
SHG85713.1 | SHH67701.1 | SAMN04488135_101436 | SAMN04488135_104152 | phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). | Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family. | 0.728 |
SHG85713.1 | SHH81414.1 | SAMN04488135_101436 | SAMN04488135_10548 | phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). | Amino acid adenylation domain-containing protein. | 0.694 |
SHH04586.1 | SHH67701.1 | SAMN04488135_10239 | SAMN04488135_104152 | Tetratricopeptide repeat-containing protein. | Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family. | 0.668 |
SHH04586.1 | SHH68655.1 | SAMN04488135_10239 | SAMN04488135_104182 | Tetratricopeptide repeat-containing protein. | Glutamate synthase (NADH) large subunit. | 0.480 |
SHH04586.1 | SHH81414.1 | SAMN04488135_10239 | SAMN04488135_10548 | Tetratricopeptide repeat-containing protein. | Amino acid adenylation domain-containing protein. | 0.717 |
SHH43040.1 | SHG85713.1 | SAMN04488135_103210 | SAMN04488135_101436 | phenylacetate-CoA ligase. | phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). | 0.888 |
SHH43040.1 | SHH67701.1 | SAMN04488135_103210 | SAMN04488135_104152 | phenylacetate-CoA ligase. | Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family. | 0.725 |
SHH43040.1 | SHH81414.1 | SAMN04488135_103210 | SAMN04488135_10548 | phenylacetate-CoA ligase. | Amino acid adenylation domain-containing protein. | 0.694 |
SHH43168.1 | SHH67701.1 | SAMN04488135_103213 | SAMN04488135_104152 | 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family. | 0.674 |
SHH43168.1 | SHH68655.1 | SAMN04488135_103213 | SAMN04488135_104182 | 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Glutamate synthase (NADH) large subunit. | 0.851 |
SHH43168.1 | SHH81414.1 | SAMN04488135_103213 | SAMN04488135_10548 | 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Amino acid adenylation domain-containing protein. | 0.876 |
SHH67672.1 | SHH67701.1 | SAMN04488135_104151 | SAMN04488135_104152 | Enoyl-CoA hydratase. | Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family. | 0.707 |
SHH67672.1 | SHH67727.1 | SAMN04488135_104151 | SAMN04488135_104153 | Enoyl-CoA hydratase. | Enoyl-CoA hydratase/carnithine racemase. | 0.945 |
SHH67672.1 | SHH67756.1 | SAMN04488135_104151 | SAMN04488135_104154 | Enoyl-CoA hydratase. | Acyl-CoA synthetase (NDP forming). | 0.767 |
SHH67672.1 | SHH67794.1 | SAMN04488135_104151 | SAMN04488135_104155 | Enoyl-CoA hydratase. | Tripartite-type tricarboxylate transporter, receptor component TctC. | 0.604 |
SHH67672.1 | SHH81414.1 | SAMN04488135_104151 | SAMN04488135_10548 | Enoyl-CoA hydratase. | Amino acid adenylation domain-containing protein. | 0.846 |
SHH67701.1 | SHG85713.1 | SAMN04488135_104152 | SAMN04488135_101436 | Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family. | phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). | 0.728 |
SHH67701.1 | SHH04586.1 | SAMN04488135_104152 | SAMN04488135_10239 | Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family. | Tetratricopeptide repeat-containing protein. | 0.668 |
SHH67701.1 | SHH43040.1 | SAMN04488135_104152 | SAMN04488135_103210 | Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family. | phenylacetate-CoA ligase. | 0.725 |
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