STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH73884.1Formate dehydrogenase major subunit. (196 aa)    
Predicted Functional Partners:
SHH73819.1
Formate dehydrogenase (quinone-dependent) iron-sulfur subunit.
 
 0.999
SHH73791.1
Formate dehydrogenase subunit gamma.
 
 0.998
SHH73849.1
Formate dehydrogenase major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.998
SHH13105.1
Fe-S-cluster-containing dehydrogenase component.
 
 0.992
fdhE
Tat proofreading chaperone FdhE; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.
 
 
 
 0.973
SHH84545.1
Quinol:cytochrome c oxidoreductase quinone-binding subunit 1.
  
 0.970
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
   
 0.928
SHH73700.1
Selenocysteine-specific elongation factor.
 
   
 0.927
SHH84571.1
Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.922
SHI19574.1
Cytochrome b subunit of the bc complex.
   
 0.908
Your Current Organism:
Candidimonas bauzanensis
NCBI taxonomy Id: 658167
Other names: Alcaligenaceae bacterium BZ59, C. bauzanensis, CGMCC 1.10190, Candidimonas bauzanensis Zhang et al. 2012, DSM 22805, LMG 26046, LMG:26046, strain BZ59
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