STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH75420.1D-amino-acid dehydrogenase. (420 aa)    
Predicted Functional Partners:
SHI23722.1
4-hydroxyphenylpyruvate dioxygenase.
   
 
  0.854
SHI24513.1
Aspartate aminotransferase.
     
 0.850
SHI28890.1
Proline racemase; Belongs to the proline racemase family.
 
  
 0.823
SHH68655.1
Glutamate synthase (NADH) large subunit.
    
 0.813
SHI27522.1
Thioredoxin reductase.
 
 0.736
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
  
 0.732
SHG69195.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
 
 0.725
SHI36170.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
 
 0.722
SHG84296.1
D-amino-acid dehydrogenase.
  
  
 
0.695
dadA
D-amino-acid dehydrogenase; Oxidative deamination of D-amino acids.
  
  
 
0.692
Your Current Organism:
Candidimonas bauzanensis
NCBI taxonomy Id: 658167
Other names: Alcaligenaceae bacterium BZ59, C. bauzanensis, CGMCC 1.10190, Candidimonas bauzanensis Zhang et al. 2012, DSM 22805, LMG 26046, LMG:26046, strain BZ59
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