Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHH40678.1 | SHH82052.1 | SAMN04488135_103146 | SAMN04488135_10574 | Uncharacterized conserved protein, contains GH25 family domain. | Protein of unknown function. | 0.427 |
SHH43710.1 | SHH82052.1 | SAMN04488135_103225 | SAMN04488135_10574 | Glycosyl transferase, family 25. | Protein of unknown function. | 0.408 |
SHH82052.1 | SHH40678.1 | SAMN04488135_10574 | SAMN04488135_103146 | Protein of unknown function. | Uncharacterized conserved protein, contains GH25 family domain. | 0.427 |
SHH82052.1 | SHH43710.1 | SAMN04488135_10574 | SAMN04488135_103225 | Protein of unknown function. | Glycosyl transferase, family 25. | 0.408 |
SHH82052.1 | SHH82073.1 | SAMN04488135_10574 | SAMN04488135_10575 | Protein of unknown function. | Cytochrome c biogenesis protein CcdA. | 0.469 |
SHH82052.1 | kdkA | SAMN04488135_10574 | SAMN04488135_11776 | Protein of unknown function. | 3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family. | 0.528 |
SHH82073.1 | SHH82052.1 | SAMN04488135_10575 | SAMN04488135_10574 | Cytochrome c biogenesis protein CcdA. | Protein of unknown function. | 0.469 |
SHH82073.1 | kdkA | SAMN04488135_10575 | SAMN04488135_11776 | Cytochrome c biogenesis protein CcdA. | 3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family. | 0.666 |
kdkA | SHH82052.1 | SAMN04488135_11776 | SAMN04488135_10574 | 3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family. | Protein of unknown function. | 0.528 |
kdkA | SHH82073.1 | SAMN04488135_11776 | SAMN04488135_10575 | 3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family. | Cytochrome c biogenesis protein CcdA. | 0.666 |