STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH95664.1MFS transporter, MHS family, proline/betaine transporter. (510 aa)    
Predicted Functional Partners:
SHH81414.1
Amino acid adenylation domain-containing protein.
  
 
 0.718
SHI25808.1
LSU ribosomal protein L31P; Belongs to the bacterial ribosomal protein bL31 family.
   
    0.699
SHH55377.1
Riboflavin synthase alpha chain.
   
    0.587
rpmJ
Large subunit ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
   
    0.584
rpmJ-2
Large subunit ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
   
    0.584
dctA
Aerobic C4-dicarboxylate transport protein; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
  
  
 0.583
SHI19741.1
Membrane fusion protein, multidrug efflux system.
  
   0.551
SHG84891.1
mRNA interferase MazF.
 
      0.519
SHI25753.1
Uncharacterized conserved protein YdgA, DUF945 family.
  
     0.496
SHH13887.1
MFS transporter, AAHS family, 4-hydroxybenzoate transporter.
  
  
  0.495
Your Current Organism:
Candidimonas bauzanensis
NCBI taxonomy Id: 658167
Other names: Alcaligenaceae bacterium BZ59, C. bauzanensis, CGMCC 1.10190, Candidimonas bauzanensis Zhang et al. 2012, DSM 22805, LMG 26046, LMG:26046, strain BZ59
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