STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI03987.1Peptide/nickel transport system ATP-binding protein. (261 aa)    
Predicted Functional Partners:
SHI03950.1
Peptide/nickel transport system permease protein.
 
 0.959
SHI03934.1
Peptide/nickel transport system permease protein.
 
 
 0.954
SHI25677.1
Peptide/nickel transport system permease protein.
 
 0.914
SHI03972.1
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
0.911
SHH39660.1
Peptide/nickel transport system permease protein.
 
 0.906
SHG89958.1
Peptide/nickel transport system permease protein.
 
 0.898
SHH03947.1
Peptide/nickel transport system permease protein.
 
 0.893
SHG72244.1
Peptide/nickel transport system permease protein.
 
 0.889
SHH70589.1
Peptide/nickel transport system permease protein.
 
 0.879
SHH44762.1
Peptide/nickel transport system permease protein.
 
 0.859
Your Current Organism:
Candidimonas bauzanensis
NCBI taxonomy Id: 658167
Other names: Alcaligenaceae bacterium BZ59, C. bauzanensis, CGMCC 1.10190, Candidimonas bauzanensis Zhang et al. 2012, DSM 22805, LMG 26046, LMG:26046, strain BZ59
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.