Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHH10371.1 | SHI07227.1 | SAMN04488135_102191 | SAMN04488135_10876 | DNA-binding transcriptional regulator, GntR family. | Hypothetical protein. | 0.627 |
SHI07227.1 | SHH10371.1 | SAMN04488135_10876 | SAMN04488135_102191 | Hypothetical protein. | DNA-binding transcriptional regulator, GntR family. | 0.627 |
SHI07227.1 | SHI07241.1 | SAMN04488135_10876 | SAMN04488135_10877 | Hypothetical protein. | SM-20-related protein. | 0.610 |
SHI07227.1 | SHI07592.1 | SAMN04488135_10876 | SAMN04488135_108102 | Hypothetical protein. | DNA-binding transcriptional regulator, GntR family. | 0.627 |
SHI07227.1 | SHI13709.1 | SAMN04488135_10876 | SAMN04488135_11015 | Hypothetical protein. | DNA-binding transcriptional regulator, GntR family. | 0.627 |
SHI07227.1 | SHI35845.1 | SAMN04488135_10876 | SAMN04488135_12224 | Hypothetical protein. | DNA-binding transcriptional regulator, GntR family. | 0.627 |
SHI07227.1 | ycgR | SAMN04488135_10876 | SAMN04488135_115124 | Hypothetical protein. | c-di-GMP-binding flagellar brake protein YcgR, contains PilZNR and PilZ domains; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility. | 0.419 |
SHI07241.1 | SHI07227.1 | SAMN04488135_10877 | SAMN04488135_10876 | SM-20-related protein. | Hypothetical protein. | 0.610 |
SHI07592.1 | SHI07227.1 | SAMN04488135_108102 | SAMN04488135_10876 | DNA-binding transcriptional regulator, GntR family. | Hypothetical protein. | 0.627 |
SHI13709.1 | SHI07227.1 | SAMN04488135_11015 | SAMN04488135_10876 | DNA-binding transcriptional regulator, GntR family. | Hypothetical protein. | 0.627 |
SHI35845.1 | SHI07227.1 | SAMN04488135_12224 | SAMN04488135_10876 | DNA-binding transcriptional regulator, GntR family. | Hypothetical protein. | 0.627 |
ycgR | SHI07227.1 | SAMN04488135_115124 | SAMN04488135_10876 | c-di-GMP-binding flagellar brake protein YcgR, contains PilZNR and PilZ domains; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility. | Hypothetical protein. | 0.419 |