STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI12262.1Transposase. (131 aa)    
Predicted Functional Partners:
SHI12247.1
IS66 Orf2 like protein.
 
   
 0.949
SHI12234.1
Transposase.
 
   
 0.878
SHI12343.1
Zinc-finger binding domain of transposase IS66.
 
   
 0.763
SHH96644.1
IS66 C-terminal element.
 
   
 0.720
SHI12274.1
Integrase core domain-containing protein.
  
  
 0.574
SHI24239.1
ABC-type nitrate/sulfonate/bicarbonate transport system, substrate-binding protein.
  
     0.485
SHI18853.1
Peptidase inhibitor I78 family protein.
  
     0.466
SHI10523.1
Competence protein ComEC.
   
  
 0.449
Your Current Organism:
Candidimonas bauzanensis
NCBI taxonomy Id: 658167
Other names: Alcaligenaceae bacterium BZ59, C. bauzanensis, CGMCC 1.10190, Candidimonas bauzanensis Zhang et al. 2012, DSM 22805, LMG 26046, LMG:26046, strain BZ59
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