STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI24390.1Predicted metal-dependent hydrolase, TIM-barrel fold. (300 aa)    
Predicted Functional Partners:
SHI24382.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.727
SHH84957.1
Fumarylacetoacetate (FAA) hydrolase family protein.
 
     0.631
SHH65061.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
 
  
 
0.538
SHI19553.1
NAD(P)H-flavin reductase.
    
  0.506
SHG84334.1
CDP-4-dehydro-6-deoxyglucose reductase.
    
  0.504
SHG85899.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
     
 0.496
SHH64792.1
NADP-dependent aldehyde dehydrogenase.
  
  
  0.495
SHI24401.1
Glutathione S-transferase.
       0.482
SHH96516.1
Gluconolactonase.
 
     0.473
SHH20604.1
Gluconolactonase.
 
     0.472
Your Current Organism:
Candidimonas bauzanensis
NCBI taxonomy Id: 658167
Other names: Alcaligenaceae bacterium BZ59, C. bauzanensis, CGMCC 1.10190, Candidimonas bauzanensis Zhang et al. 2012, DSM 22805, LMG 26046, LMG:26046, strain BZ59
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