STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI25696.1Helix-turn-helix. (229 aa)    
Predicted Functional Partners:
SHH70018.1
Kynurenine formamidase.
  
    0.674
SHI24186.1
Putative cyclase.
  
    0.674
SHH37280.1
Uncharacterized conserved protein, DUF849 family.
 
    0.666
SHI23012.1
Uncharacterized conserved protein, DUF849 family.
 
    0.665
SHI24826.1
Uncharacterized conserved protein, DUF849 family.
 
    0.664
SHH06761.1
Predicted ABC-type ATPase.
    
 
 0.607
SHH75272.1
ABC-type spermidine/putrescine transport system, permease component I.
 
    0.591
SHI25690.1
Peptide/nickel transport system substrate-binding protein.
 
     0.560
SHI25703.1
Ribosomal protein S12 methylthiotransferase accessory factor.
       0.548
SHH07487.1
HipA N-terminal domain-containing protein.
  
 
 0.544
Your Current Organism:
Candidimonas bauzanensis
NCBI taxonomy Id: 658167
Other names: Alcaligenaceae bacterium BZ59, C. bauzanensis, CGMCC 1.10190, Candidimonas bauzanensis Zhang et al. 2012, DSM 22805, LMG 26046, LMG:26046, strain BZ59
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.