STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI27453.1AraC-type DNA-binding protein. (312 aa)    
Predicted Functional Partners:
SHH63458.1
AraC-type DNA-binding protein.
  
     0.593
SHH09158.1
Transcriptional regulator, AraC family.
  
     0.589
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.587
SHH92156.1
Helix-turn-helix domain-containing protein.
  
     0.584
SHH68655.1
Glutamate synthase (NADH) large subunit.
    
  0.578
SHG80633.1
AraC-type DNA-binding protein.
  
     0.552
SHH51017.1
Transcriptional regulator, AraC family.
  
     0.551
SHI25615.1
AraC-type DNA-binding protein.
  
     0.540
SHH35903.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
  
   0.501
SHI41291.1
AraC-type DNA-binding protein.
  
     0.485
Your Current Organism:
Candidimonas bauzanensis
NCBI taxonomy Id: 658167
Other names: Alcaligenaceae bacterium BZ59, C. bauzanensis, CGMCC 1.10190, Candidimonas bauzanensis Zhang et al. 2012, DSM 22805, LMG 26046, LMG:26046, strain BZ59
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.